How to Isolate Peripheral Blood Mononuclear Cells (PBMCs) from Leukopaks
How to Isolate Peripheral Blood Mononuclear Cells (PBMCs) from Leukopaks
Leukapheresis packs (also referred to as leukopaks or leukopacks; e.g. Catalog #70500) are an enriched leukapheresis product from normal peripheral blood. This product contains a large number of peripheral blood mononuclear cells (PBMCs), consisting of lymphocytes (i.e. T cells, B cells, and NK cells) and monocytes. Compared to whole blood, leukapheresis packs contain a lower number of granulocytes, platelets, red blood cells, and plasma. Due to donor variability, cell frequencies may vary. Additionally, granulocyte content may vary depending on the leukapheresis collection method.
This protocol provides three options for isolating PBMCs from leukapheresis packs by immunomagnetic cell isolation, red blood cell lysis, or density gradient centrifugation. With EasySep™ Direct Human PBMC Isolation Kit (Catalog #19654), you can obtain highly purified PBMCs immunomagnetically without red blood cell (RBC) lysis or centrifugation in as little as 20 minutes (see data Figure 4). This kit allows you to automate PBMC isolation using RoboSep™ instruments to minimize sample handling, free up valuable hands-on time, and ultimately increase sample processing throughput. Alternatively, another option is to isolate PBMCs using RBC lysis with Ammonium Chloride Solution (Catalog #07800). Most leukapheresis packs will contain few granulocytes and can be processed using this method. However, if granulocyte contamination is a concern, the recommendation is to isolate PBMCs with an appropriate density gradient medium (e.g. Lymphoprep™, Catalog #07851).
Option 1: Automated Immunomagnetic Cell Isolation with EasySep™ Direct Human PBMC Isolation Kit
Materials
- Leukapheresis pack (e.g. Catalog #70500)*
- EasySep™ Direct Human PBMC Isolation Kit (Catalog #19654 or #19654RF)
- EasySep™ Magnet (e.g. Catalog #18000 for manual cell isolation or RoboSep™-S (Catalog #20001) for automated cell isolation
- Recommended medium (medium should be free of Ca++ and Mg++). Options include:
- EasySep™ Buffer (Catalog #20144) or
- RoboSep™ Buffer (Catalog #20104) or
- D-PBS (Without Ca++ and Mg++; Catalog #37350) or
- PBS containing 2% FBS and 1 mM EDTA
- Ethylenediaminetetraacetic acid (EDTA)
Protocol
Below is an example of how to concentrate a full-size leukapheresis pack and then perform PBMC isolation using RoboSep™-S. For manual immunomagnetic cell isolation, follow the instructions in the Product Information Sheet - Leukapheresis for using EasySep™ Direct Human PBMC Isolation Kit.
- Transfer the entire contents of the leukapheresis bag into tubes. Centrifuge at 300 x g for 10 minutes with the brake ON.
- Carefully remove the supernatant and resuspend the cells in recommended medium to obtain a final volume of 20 mL and approximate concentration of 4 x 108 cells/mL.
- Add EDTA at 6 mM final concentration and aliquot the 20 mL into 4 x 14 mL polystyrene round-bottom tubes. Each tube will now contain 5 mL of resuspended cells.
- Select the appropriate protocol on the instrument’s screen.
- Follow the onscreen prompts and load the 4 x 14 mL tubes, reagents, tips, and buffer onto the RoboSep™-S carousel.
- Press “Run”.
- Come back in 30 minutes after the run is complete and collect the isolated cells.
Option 2: RBC Lysis with Ammonium Chloride Lysis
Materials
- Leukapheresis pack (e.g. Catalog #70500)*
- Ammonium Chloride Solution (Catalog #07800)
- 50 mL conical tubes (e.g. Catalog #38010)
- Recommended medium. Options include:
- EasySep™ Buffer (Catalog #20144) or
- PBS containing 2% FBS (e.g. Dulbecco's Phosphate Buffered Saline with 2% Fetal Bovine Serum, Catalog #07905)
- Sterile bottle
Protocol
- Transfer the contents of the leukapheresis pack into a sterile bottle. Please refer to Part I of our Leukapheresis Processing Protocol for more information on handling leukapheresis samples.
- Add Ammonium Chloride Solution to the sample at a 1:4 ratio (e.g. 50 mL sample + 200 mL Ammonium Chloride Solution). Mix thoroughly.
- Incubate on ice for 15 minutes.
- Transfer to 50 mL conical tubes. Centrifuge at 500 x g for 10 minutes at room temperature (15 - 25°C) with the brake ON.
- Remove the supernatant. Gently resuspend the cell pellet, and top up to 50 mL with recommended medium. Centrifuge at 300 x g for 10 minutes at room temperature (15 - 25°C) with the brake ON.
- Repeat wash step 5.
Optional: If desired, perform a platelet removal wash instead of a regular cell wash by centrifuging at 120 x g for 10 minutes at room temperature (15 - 25°C) with the brake OFF. Additional platelet washes may be required depending on donor variability.
- Remove the supernatant and resuspend the PBMC pellet in appropriate medium.
Option 3: Density Gradient Centrifugation
Materials
- Leukapheresis pack (e.g. Catalog #70500)*
- Density gradient medium (e.g. Lymphoprep™, Catalog #07851)
- 50 mL conical tubes (e.g. Catalog #38010)
- Recommended medium. Options include:
- EasySep™ Buffer (Catalog #20144) or
- PBS containing 2% FBS (e.g. Dulbecco's Phosphate Buffered Saline with 2% Fetal Bovine Serum, Catalog #07905)
- Sterile bottle
- Serological pipettes (e.g. Falcon® Serological Pipettes, 25 mL, Catalog #38005)
Protocol
Before You Begin: Ensure all samples and reagents are at room temperature (15 - 25°C) prior to starting this protocol.
- Transfer the contents of the leukapheresis pack into a sterile bottle. Refer to Part I of our Leukapheresis Processing Protocol for more information on handling leukapheresis samples.
- Dilute the leukapheresis sample 1:1 with recommended medium (e.g. 50 mL sample + 50 mL EasySep™ Buffer or PBS containing 2% FBS). Wash the leukapheresis bag with the buffer used for dilution.
Note: In some cases where the leukocyte concentration is high, a 1:2 dilution (e.g. 50 mL sample + 100 mL medium) can help improve separation.
- Add 15 mL of density gradient medium to a 50 mL conical tube.
- Slowly layer 30 mL of diluted leukapheresis sample over the density gradient medium.
- Centrifuge at 800 x g for 20 minutes at room temperature (15 - 25°C) with the brake off.
Note: If the blood has been stored for more than 2 hours, increase the centrifugation time to 30 minutes.
- Remove and discard the upper plasma layer without disturbing the plasma:density gradient medium interface.
- Collect the PBMC layer at the plasma:density gradient medium interface without disturbing the RBC/granulocyte pellet.
- Wash the isolated PBMCs with recommended medium. Centrifuge at 300 x g for 10 minutes at room temperature (15 - 25°C) with the brake ON.
Optional: If desired, perform a platelet removal wash instead of a regular cell wash by centrifuging at 120 x g for 10 minutes at room temperature (15 - 25°C) with the brake OFF. Additional platelet washes may be required depending on donor variability.
- Remove the supernatant and resuspend the PBMC pellet in appropriate medium.

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